J5_6QUL_004

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6QUL|1|A|U|1758, 6QUL|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6QUL_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.069

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QUL|1|A|G|1674
6QUL|1|A|C|1675
6QUL|1|A|A|1676
6QUL|1|A|A|1677
6QUL|1|A|A|1678
6QUL|1|A|A|1679
6QUL|1|A|U|1680
6QUL|1|A|G|1681
6QUL|1|A|G|1682
*
6QUL|1|A|C|1706
6QUL|1|A|G|1707
*
6QUL|1|A|U|1751
6QUL|1|A|C|1752
*
6QUL|1|A|G|1756
6QUL|1|A|A|1757
6QUL|1|A|U|1758
6QUL|1|A|A|1759
6QUL|1|A|C|1760
6QUL|1|A|C|1761
6QUL|1|A|A|1762
6QUL|1|A|G|1763
6QUL|1|A|C|1764
*
6QUL|1|A|G|1988
6QUL|1|A|G|1989
6QUL|1|A|C|1990

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19