J5_6R6G_002
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6R6G|1|5|C|1682, 6R6G|1|5|U|1743
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R6G_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.1042
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|G|896
6R6G|1|5|G|897
6R6G|1|5|A|898
6R6G|1|5|G|899
6R6G|1|5|U|900
6R6G|1|5|C|901
*
6R6G|1|5|G|1076
6R6G|1|5|G|1077
6R6G|1|5|A|1078
6R6G|1|5|C|1079
*
6R6G|1|5|G|1218
6R6G|1|5|U|1219
6R6G|1|5|U|1220
6R6G|1|5|C|1221
*
6R6G|1|5|G|1681
6R6G|1|5|C|1682
6R6G|1|5|C|1683
*
6R6G|1|5|G|1738
6R6G|1|5|C|1739
6R6G|1|5|A|1740
6R6G|1|5|G|1741
6R6G|1|5|A|1742
6R6G|1|5|U|1743
6R6G|1|5|C|1744
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- uL4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain e
- eL32
- Chain r
- eL28
Coloring options: