J5_6R6G_005

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUGA*UUUG*CA*UG*CAGAAAA

Length

19 nucleotides

Bulged bases

6R6G|1|5|G|2620, 6R6G|1|5|A|2946, 6R6G|1|5|G|2947, 6R6G|1|5|A|2948, 6R6G|1|5|A|2949, 6R6G|1|5|A|2950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6R6G_005 not in the Motif Atlas

Homologous match to J5_8C3A_006

Geometric discrepancy: 0.3316

The information below is about J5_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|U|2618
6R6G|1|5|U|2619
6R6G|1|5|G|2620
6R6G|1|5|A|2621
*
6R6G|1|5|U|2758
6R6G|1|5|U|2759
6R6G|1|5|U|2760
6R6G|1|5|G|2761
*
6R6G|1|5|C|2774
6R6G|1|5|A|2775
*
6R6G|1|5|U|2797
6R6G|1|5|G|2798
*
6R6G|1|5|C|2945
6R6G|1|5|A|2946
6R6G|1|5|G|2947
6R6G|1|5|A|2948
6R6G|1|5|A|2949
6R6G|1|5|A|2950
6R6G|1|5|A|2951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 3

Transfer RNA; tRNA

Chain A

uL2

Chain N

Ribosomal protein L15

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain b

eL29

Chain o

eL42