3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6R6G|1|K|U|55, 6R6G|1|K|A|92, 6R6G|1|K|C|472
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6R6G_008 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.0931
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6R6G|1|K|C|53
6R6G|1|K|A|54
6R6G|1|K|U|55
6R6G|1|K|G|56
*
6R6G|1|K|C|89
6R6G|1|K|G|90
6R6G|1|K|A|91
6R6G|1|K|A|92
6R6G|1|K|U|93
6R6G|1|K|G|94
6R6G|1|K|G|95
6R6G|1|K|C|96
*
6R6G|1|K|G|434
6R6G|1|K|A|435
6R6G|1|K|G|436
*
6R6G|1|K|C|457
6R6G|1|K|A|458
6R6G|1|K|C|459
*
6R6G|1|K|G|470
6R6G|1|K|G|471
6R6G|1|K|C|472
6R6G|1|K|A|473
6R6G|1|K|G|474

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain CC
40S ribosomal protein S8
Chain DD
Ribosomal protein S9 (Predicted)
Chain NN
40S ribosomal protein S24
Chain V
eL14
Chain x
40S ribosomal protein S4
Chain z
40S ribosomal protein S6

Coloring options:


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