J5_6R84_003
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6R84|1|1|U|719, 6R84|1|1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6R84_003 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.1058
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R84|1|1|C|675
6R84|1|1|G|676
6R84|1|1|A|677
6R84|1|1|G|678
*
6R84|1|1|C|702
6R84|1|1|G|703
6R84|1|1|U|704
6R84|1|1|A|705
6R84|1|1|A|706
*
6R84|1|1|U|713
6R84|1|1|G|714
6R84|1|1|A|715
6R84|1|1|A|716
6R84|1|1|C|717
6R84|1|1|G|718
6R84|1|1|U|719
6R84|1|1|A|720
6R84|1|1|G|721
*
6R84|1|1|C|749
6R84|1|1|G|750
6R84|1|1|A|751
*
6R84|1|1|U|782
6R84|1|1|A|783
6R84|1|1|A|784
6R84|1|1|G|785
6R84|1|1|A|786
6R84|1|1|G|787
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L4-A
- Chain N
- 60S ribosomal protein L13-A
- Chain S
- 60S ribosomal protein L18-A
- Chain c
- 60S ribosomal protein L28
- Chain d
- 60S ribosomal protein L29
- Chain k
- 60S ribosomal protein L36-A
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