J5_6RBE_001

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

6RBE|1|2|A|541, 6RBE|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|C|31
6RBE|1|2|U|32
6RBE|1|2|U|33
6RBE|1|2|G|34
6RBE|1|2|U|35
*
6RBE|1|2|A|473
6RBE|1|2|A|474
6RBE|1|2|A|475
6RBE|1|2|U|476
6RBE|1|2|A|477
6RBE|1|2|A|478
6RBE|1|2|C|479
*
6RBE|1|2|G|509
6RBE|1|2|G|510
6RBE|1|2|A|511
6RBE|1|2|A|512
6RBE|1|2|U|513
6RBE|1|2|G|514
6RBE|1|2|A|515
6RBE|1|2|G|516
*
6RBE|1|2|C|536
6RBE|1|2|G|537
6RBE|1|2|A|538
6RBE|1|2|G|539
6RBE|1|2|G|540
6RBE|1|2|A|541
6RBE|1|2|A|542
6RBE|1|2|C|543
6RBE|1|2|A|544
6RBE|1|2|A|545
6RBE|1|2|U|546
*
6RBE|1|2|A|592
6RBE|1|2|U|593
6RBE|1|2|A|594
6RBE|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A