J5_6RBE_003

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6RBE|1|2|U|132, 6RBE|1|2|A|140, 6RBE|1|2|U|141, 6RBE|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|A|124
6RBE|1|2|U|125
6RBE|1|2|A|126
6RBE|1|2|G|127
6RBE|1|2|U|128
6RBE|1|2|U|129
6RBE|1|2|C|130
6RBE|1|2|C|131
6RBE|1|2|U|132
6RBE|1|2|U|133
6RBE|1|2|U|134
6RBE|1|2|A|135
6RBE|1|2|C|136
6RBE|1|2|U|137
6RBE|1|2|A|138
6RBE|1|2|C|139
6RBE|1|2|A|140
6RBE|1|2|U|141
6RBE|1|2|G|142
6RBE|1|2|G|143
*
6RBE|1|2|C|172
6RBE|1|2|A|173
6RBE|1|2|U|174
6RBE|1|2|G|175
6RBE|1|2|C|176
6RBE|1|2|U|177
6RBE|1|2|U|178
6RBE|1|2|A|179
6RBE|1|2|A|180
6RBE|1|2|A|181
6RBE|1|2|A|182
*
6RBE|1|2|U|203
6RBE|1|2|G|204
*
6RBE|1|2|C|263
6RBE|1|2|G|264
6RBE|1|2|A|265
*
6RBE|1|2|U|289
6RBE|1|2|G|290
6RBE|1|2|G|291
6RBE|1|2|U|292
6RBE|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A