J5_6RBE_006

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUUGGUUC*GGACCAUCGUAAUGAU

Length

54 nucleotides

Bulged bases

6RBE|1|2|U|639, 6RBE|1|2|U|694, 6RBE|1|2|C|696, 6RBE|1|2|C|697, 6RBE|1|2|U|813, 6RBE|1|2|G|815, 6RBE|1|2|U|820, 6RBE|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RBE|1|2|A|636
6RBE|1|2|C|637
6RBE|1|2|U|638
6RBE|1|2|U|639
6RBE|1|2|U|640
6RBE|1|2|G|641
*
6RBE|1|2|U|693
6RBE|1|2|U|694
6RBE|1|2|U|695
6RBE|1|2|C|696
6RBE|1|2|C|697
6RBE|1|2|U|698
*
6RBE|1|2|A|740
6RBE|1|2|C|741
6RBE|1|2|U|742
6RBE|1|2|U|743
6RBE|1|2|U|744
*
6RBE|1|2|A|807
6RBE|1|2|U|808
6RBE|1|2|A|809
6RBE|1|2|G|810
6RBE|1|2|A|811
6RBE|1|2|A|812
6RBE|1|2|U|813
6RBE|1|2|A|814
6RBE|1|2|G|815
6RBE|1|2|G|816
6RBE|1|2|A|817
6RBE|1|2|C|818
6RBE|1|2|G|819
6RBE|1|2|U|820
6RBE|1|2|U|821
6RBE|1|2|U|822
6RBE|1|2|G|823
6RBE|1|2|G|824
6RBE|1|2|U|825
6RBE|1|2|U|826
6RBE|1|2|C|827
*
6RBE|1|2|G|845
6RBE|1|2|G|846
6RBE|1|2|A|847
6RBE|1|2|C|848
6RBE|1|2|C|849
6RBE|1|2|A|850
6RBE|1|2|U|851
6RBE|1|2|C|852
6RBE|1|2|G|853
6RBE|1|2|U|854
6RBE|1|2|A|855
6RBE|1|2|A|856
6RBE|1|2|U|857
6RBE|1|2|G|858
6RBE|1|2|A|859
6RBE|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A