J5_6RM3_001

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGAU*AGAC*GUUC*GC*GCCGAUC

Length

23 nucleotides

Bulged bases

6RM3|1|L50|U|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6RM3_001 not in the Motif Atlas

Homologous match to J5_8C3A_002

Geometric discrepancy: 0.1821

The information below is about J5_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|G|454
6RM3|1|L50|G|455
6RM3|1|L50|A|456
6RM3|1|L50|G|457
6RM3|1|L50|A|458
6RM3|1|L50|U|459
*
6RM3|1|L50|A|525
6RM3|1|L50|G|526
6RM3|1|L50|A|527
6RM3|1|L50|C|528
*
6RM3|1|L50|G|667
6RM3|1|L50|U|668
6RM3|1|L50|U|669
6RM3|1|L50|C|670
*
6RM3|1|L50|G|1059
6RM3|1|L50|C|1060
*
6RM3|1|L50|G|1113
6RM3|1|L50|C|1114
6RM3|1|L50|C|1115
6RM3|1|L50|G|1116
6RM3|1|L50|A|1117
6RM3|1|L50|U|1118
6RM3|1|L50|C|1119

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LAA

uL15

Chain LC0

uL4

Chain LEE

eL32

Chain LL0

eL13

Chain LN0

eL15