J5_6RZZ_002
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6RZZ|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6RZZ_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0588
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RZZ|1|A|G|658
6RZZ|1|A|G|659
6RZZ|1|A|A|660
6RZZ|1|A|G|661
6RZZ|1|A|U|662
6RZZ|1|A|C|663
*
6RZZ|1|A|G|799
6RZZ|1|A|G|800
6RZZ|1|A|A|801
6RZZ|1|A|C|802
*
6RZZ|1|A|G|941
6RZZ|1|A|U|942
6RZZ|1|A|U|943
6RZZ|1|A|C|944
*
6RZZ|1|A|G|1375
6RZZ|1|A|C|1376
*
6RZZ|1|A|G|1431
6RZZ|1|A|C|1432
6RZZ|1|A|A|1433
6RZZ|1|A|G|1434
6RZZ|1|A|A|1435
6RZZ|1|A|U|1436
6RZZ|1|A|C|1437
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L15-A
- Chain e
- 60S ribosomal protein L32
- Chain u
- Cytoplasmic 60S subunit biogenesis factor REI1
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
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