J5_6S0K_004

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6S0K|1|A|U|1758, 6S0K|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6S0K_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0663

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6S0K|1|A|G|1674
6S0K|1|A|C|1675
6S0K|1|A|A|1676
6S0K|1|A|A|1677
6S0K|1|A|A|1678
6S0K|1|A|A|1679
6S0K|1|A|U|1680
6S0K|1|A|G|1681
6S0K|1|A|G|1682
*
6S0K|1|A|C|1706
6S0K|1|A|G|1707
*
6S0K|1|A|U|1751
6S0K|1|A|C|1752
*
6S0K|1|A|G|1756
6S0K|1|A|A|1757
6S0K|1|A|U|1758
6S0K|1|A|A|1759
6S0K|1|A|C|1760
6S0K|1|A|C|1761
6S0K|1|A|A|1762
6S0K|1|A|G|1763
6S0K|1|A|C|1764
*
6S0K|1|A|G|1988
6S0K|1|A|G|1989
6S0K|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19