J5_6S0X_002

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CCAAAC*GGGUUGUAGGACA*UGGAUCCUGAGUAC*GGAAUCUG*UAAG

Length

45 nucleotides

Bulged bases

6S0X|1|A|U|301, 6S0X|1|A|G|418, 6S0X|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S0X|1|A|C|271
6S0X|1|A|C|272
6S0X|1|A|A|273
6S0X|1|A|A|274
6S0X|1|A|A|275
6S0X|1|A|C|276
*
6S0X|1|A|G|295
6S0X|1|A|G|296
6S0X|1|A|G|297
6S0X|1|A|U|298
6S0X|1|A|U|299
6S0X|1|A|G|300
6S0X|1|A|U|301
6S0X|1|A|A|302
6S0X|1|A|G|303
6S0X|1|A|G|304
6S0X|1|A|A|305
6S0X|1|A|C|306
6S0X|1|A|A|307
*
6S0X|1|A|U|408
6S0X|1|A|G|409
6S0X|1|A|G|410
6S0X|1|A|A|411
6S0X|1|A|U|412
6S0X|1|A|C|413
6S0X|1|A|C|414
6S0X|1|A|U|415
6S0X|1|A|G|416
6S0X|1|A|A|417
6S0X|1|A|G|418
6S0X|1|A|U|419
6S0X|1|A|A|420
6S0X|1|A|C|421
*
6S0X|1|A|G|445
6S0X|1|A|G|446
6S0X|1|A|A|447
6S0X|1|A|A|448
6S0X|1|A|U|449
6S0X|1|A|C|450
6S0X|1|A|U|451
6S0X|1|A|G|452
*
6S0X|1|A|U|467
6S0X|1|A|A|468
6S0X|1|A|A|469
6S0X|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

50S ribosomal protein L28