3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GACGGAAAGACC*GGAUAACAGG*CACCUCGAUGU*GUUCAG*CGGUCCCUAUC
Length
50 nucleotides
Bulged bases
6S0X|1|A|C|2082, 6S0X|1|A|A|2089, 6S0X|1|A|C|2090, 6S0X|1|A|A|2475, 6S0X|1|A|U|2476, 6S0X|1|A|C|2526, 6S0X|1|A|U|2636, 6S0X|1|A|U|2640
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6S0X|1|A|G|2080
6S0X|1|A|A|2081
6S0X|1|A|C|2082
6S0X|1|A|G|2083
6S0X|1|A|G|2084
6S0X|1|A|A|2085
6S0X|1|A|A|2086
6S0X|1|A|A|2087
6S0X|1|A|G|2088
6S0X|1|A|A|2089
6S0X|1|A|C|2090
6S0X|1|A|C|2091
*
6S0X|1|A|G|2473
6S0X|1|A|G|2474
6S0X|1|A|A|2475
6S0X|1|A|U|2476
6S0X|1|A|A|2477
6S0X|1|A|A|2478
6S0X|1|A|C|2479
6S0X|1|A|A|2480
6S0X|1|A|G|2481
6S0X|1|A|G|2482
*
6S0X|1|A|C|2523
6S0X|1|A|A|2524
6S0X|1|A|C|2525
6S0X|1|A|C|2526
6S0X|1|A|U|2527
6S0X|1|A|C|2528
6S0X|1|A|G|2529
6S0X|1|A|A|2530
6S0X|1|A|U|2531
6S0X|1|A|G|2532
6S0X|1|A|U|2533
*
6S0X|1|A|G|2610
6S0X|1|A|U|2611
6S0X|1|A|U|2612
6S0X|1|A|C|2613
6S0X|1|A|A|2614
6S0X|1|A|G|2615
*
6S0X|1|A|C|2633
6S0X|1|A|G|2634
6S0X|1|A|G|2635
6S0X|1|A|U|2636
6S0X|1|A|C|2637
6S0X|1|A|C|2638
6S0X|1|A|C|2639
6S0X|1|A|U|2640
6S0X|1|A|A|2641
6S0X|1|A|U|2642
6S0X|1|A|C|2643

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain K
50S ribosomal protein L16
Chain Z
50S ribosomal protein L32

Coloring options:

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