3D structure

PDB id
6S0X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
UUUA*UUUGACUGGGGCGGUCG*CGCUC*GACUUAGUGAUCC*GCUCAACGGAUAAAA
Length
54 nucleotides
Bulged bases
6S0X|1|A|U|2103, 6S0X|1|A|U|2276, 6S0X|1|A|G|2277, 6S0X|1|A|U|2417, 6S0X|1|A|A|2453, 6S0X|1|A|G|2455, 6S0X|1|A|A|2457, 6S0X|1|A|U|2458, 6S0X|1|A|A|2459, 6S0X|1|A|A|2460, 6S0X|1|A|A|2461
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6S0X|1|A|U|2101
6S0X|1|A|U|2102
6S0X|1|A|U|2103
6S0X|1|A|A|2104
*
6S0X|1|A|U|2270
6S0X|1|A|U|2271
6S0X|1|A|U|2272
6S0X|1|A|G|2273
6S0X|1|A|A|2274
6S0X|1|A|C|2275
6S0X|1|A|U|2276
6S0X|1|A|G|2277
6S0X|1|A|G|2278
6S0X|1|A|G|2279
6S0X|1|A|G|2280
6S0X|1|A|C|2281
6S0X|1|A|G|2282
6S0X|1|A|G|2283
6S0X|1|A|U|2284
6S0X|1|A|C|2285
6S0X|1|A|G|2286
*
6S0X|1|A|C|2308
6S0X|1|A|G|2309
6S0X|1|A|C|2310
6S0X|1|A|U|2311
6S0X|1|A|C|2312
*
6S0X|1|A|G|2410
6S0X|1|A|A|2411
6S0X|1|A|C|2412
6S0X|1|A|U|2413
6S0X|1|A|U|2414
6S0X|1|A|A|2415
6S0X|1|A|G|2416
6S0X|1|A|U|2417
6S0X|1|A|G|2418
6S0X|1|A|A|2419
6S0X|1|A|U|2420
6S0X|1|A|C|2421
6S0X|1|A|C|2422
*
6S0X|1|A|G|2448
6S0X|1|A|C|2449
6S0X|1|A|U|2450
6S0X|1|A|C|2451
6S0X|1|A|A|2452
6S0X|1|A|A|2453
6S0X|1|A|C|2454
6S0X|1|A|G|2455
6S0X|1|A|G|2456
6S0X|1|A|A|2457
6S0X|1|A|U|2458
6S0X|1|A|A|2459
6S0X|1|A|A|2460
6S0X|1|A|A|2461
6S0X|1|A|A|2462

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain C
50S ribosomal protein L2
Chain J
50S ribosomal protein L15
Chain K
50S ribosomal protein L16
Chain U
50S ribosomal protein L27
Chain V
50S ribosomal protein L28

Coloring options:

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