J5_6S12_001
3D structure
- PDB id
- 6S12 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCC*GGCACAC*GGAAGAGAAAGAAAAUUCGAUU*AAGAG*CUAAAUAC
- Length
- 45 nucleotides
- Bulged bases
- 6S12|1|A|C|184, 6S12|1|A|A|226, 6S12|1|A|A|230, 6S12|1|A|U|232, 6S12|1|A|C|234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S12|1|A|G|45
6S12|1|A|C|46
6S12|1|A|C|47
*
6S12|1|A|G|180
6S12|1|A|G|181
6S12|1|A|C|182
6S12|1|A|A|183
6S12|1|A|C|184
6S12|1|A|A|185
6S12|1|A|C|186
*
6S12|1|A|G|217
6S12|1|A|G|218
6S12|1|A|A|219
6S12|1|A|A|220
6S12|1|A|G|221
6S12|1|A|A|222
6S12|1|A|G|223
6S12|1|A|A|224
6S12|1|A|A|225
6S12|1|A|A|226
6S12|1|A|G|227
6S12|1|A|A|228
6S12|1|A|A|229
6S12|1|A|A|230
6S12|1|A|A|231
6S12|1|A|U|232
6S12|1|A|U|233
6S12|1|A|C|234
6S12|1|A|G|235
6S12|1|A|A|236
6S12|1|A|U|237
6S12|1|A|U|238
*
6S12|1|A|A|265
6S12|1|A|A|266
6S12|1|A|G|267
6S12|1|A|A|268
6S12|1|A|G|269
*
6S12|1|A|C|472
6S12|1|A|U|473
6S12|1|A|A|474
6S12|1|A|A|475
6S12|1|A|A|476
6S12|1|A|U|477
6S12|1|A|A|478
6S12|1|A|C|479
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain J
- 50S ribosomal protein L15
Coloring options: