J5_6S12_005

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

6S12|1|A|A|2475, 6S12|1|A|U|2476, 6S12|1|A|U|2612, 6S12|1|A|U|2636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S12|1|A|G|2084
6S12|1|A|A|2085
6S12|1|A|A|2086
6S12|1|A|A|2087
6S12|1|A|G|2088
6S12|1|A|A|2089
6S12|1|A|C|2090
6S12|1|A|C|2091
*
6S12|1|A|G|2473
6S12|1|A|G|2474
6S12|1|A|A|2475
6S12|1|A|U|2476
6S12|1|A|A|2477
6S12|1|A|A|2478
6S12|1|A|C|2479
6S12|1|A|A|2480
*
6S12|1|A|U|2527
6S12|1|A|C|2528
6S12|1|A|G|2529
6S12|1|A|A|2530
6S12|1|A|U|2531
6S12|1|A|G|2532
6S12|1|A|U|2533
6S12|1|A|C|2534
*
6S12|1|A|G|2609
6S12|1|A|G|2610
6S12|1|A|U|2611
6S12|1|A|U|2612
6S12|1|A|C|2613
6S12|1|A|A|2614
6S12|1|A|G|2615
*
6S12|1|A|C|2633
6S12|1|A|G|2634
6S12|1|A|G|2635
6S12|1|A|U|2636
6S12|1|A|C|2637
6S12|1|A|C|2638

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27

Chain Z

50S ribosomal protein L32