J5_6S13_003
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6S13|1|A|U|1293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6S13_003 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1362
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6S13|1|A|C|627
6S13|1|A|G|628
6S13|1|A|A|629
6S13|1|A|G|630
6S13|1|A|U|631
6S13|1|A|U|632
*
6S13|1|A|A|713
6S13|1|A|G|714
6S13|1|A|A|715
6S13|1|A|C|716
*
6S13|1|A|G|854
6S13|1|A|U|855
6S13|1|A|U|856
6S13|1|A|C|857
*
6S13|1|A|G|1234
6S13|1|A|C|1235
*
6S13|1|A|G|1288
6S13|1|A|A|1289
6S13|1|A|G|1290
6S13|1|A|A|1291
6S13|1|A|A|1292
6S13|1|A|U|1293
6S13|1|A|G|1294
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L21
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