3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CGAGUU*AGAC*GUUC*GC*GAGAAUG
Length
23 nucleotides
Bulged bases
6S13|1|A|U|1293
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6S13_003 not in the Motif Atlas
Homologous match to J5_4WF9_004
Geometric discrepancy: 0.1362
The information below is about J5_4WF9_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

6S13|1|A|C|627
6S13|1|A|G|628
6S13|1|A|A|629
6S13|1|A|G|630
6S13|1|A|U|631
6S13|1|A|U|632
*
6S13|1|A|A|713
6S13|1|A|G|714
6S13|1|A|A|715
6S13|1|A|C|716
*
6S13|1|A|G|854
6S13|1|A|U|855
6S13|1|A|U|856
6S13|1|A|C|857
*
6S13|1|A|G|1234
6S13|1|A|C|1235
*
6S13|1|A|G|1288
6S13|1|A|A|1289
6S13|1|A|G|1290
6S13|1|A|A|1291
6S13|1|A|A|1292
6S13|1|A|U|1293
6S13|1|A|G|1294

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain J
50S ribosomal protein L15
Chain O
50S ribosomal protein L20
Chain P
50S ribosomal protein L21

Coloring options:


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