J5_6S13_005
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUCAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 6S13|1|A|A|2089, 6S13|1|A|A|2475, 6S13|1|A|U|2612, 6S13|1|A|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S13|1|A|G|2084
6S13|1|A|A|2085
6S13|1|A|A|2086
6S13|1|A|A|2087
6S13|1|A|G|2088
6S13|1|A|A|2089
6S13|1|A|C|2090
6S13|1|A|C|2091
*
6S13|1|A|G|2473
6S13|1|A|G|2474
6S13|1|A|A|2475
6S13|1|A|U|2476
6S13|1|A|A|2477
6S13|1|A|A|2478
6S13|1|A|C|2479
6S13|1|A|A|2480
6S13|1|A|G|2481
*
6S13|1|A|C|2525
6S13|1|A|C|2526
6S13|1|A|U|2527
6S13|1|A|C|2528
6S13|1|A|G|2529
6S13|1|A|A|2530
6S13|1|A|U|2531
6S13|1|A|G|2532
6S13|1|A|U|2533
6S13|1|A|C|2534
*
6S13|1|A|G|2609
6S13|1|A|G|2610
6S13|1|A|U|2611
6S13|1|A|U|2612
6S13|1|A|C|2613
6S13|1|A|A|2614
6S13|1|A|G|2615
*
6S13|1|A|C|2633
6S13|1|A|G|2634
6S13|1|A|G|2635
6S13|1|A|U|2636
6S13|1|A|C|2637
6S13|1|A|C|2638
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L32
Coloring options: