J5_6S13_007
3D structure
- PDB id
- 6S13 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.58 Å
Loop
- Sequence
- ACAUGCAAG*CGGACGGG*CAC*GAC*GGCAGCAGU
- Length
- 32 nucleotides
- Bulged bases
- 6S13|1|a|A|61, 6S13|1|a|A|108, 6S13|1|a|G|110, 6S13|1|a|A|361
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S13|1|a|A|54
6S13|1|a|C|55
6S13|1|a|A|56
6S13|1|a|U|57
6S13|1|a|G|58
6S13|1|a|C|59
6S13|1|a|A|60
6S13|1|a|A|61
6S13|1|a|G|62
*
6S13|1|a|C|105
6S13|1|a|G|106
6S13|1|a|G|107
6S13|1|a|A|108
6S13|1|a|C|109
6S13|1|a|G|110
6S13|1|a|G|111
6S13|1|a|G|112
*
6S13|1|a|C|322
6S13|1|a|A|323
6S13|1|a|C|324
*
6S13|1|a|G|345
6S13|1|a|A|346
6S13|1|a|C|347
*
6S13|1|a|G|358
6S13|1|a|G|359
6S13|1|a|C|360
6S13|1|a|A|361
6S13|1|a|G|362
6S13|1|a|C|363
6S13|1|a|A|364
6S13|1|a|G|365
6S13|1|a|U|366
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L14
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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