J5_6S13_008

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GC*GCACAC*GGAAGAGAAAGAAAAUUCGAUU*AAGAG*CUAAAUAC

Length

43 nucleotides

Bulged bases

6S13|1|A|C|184, 6S13|1|A|A|226, 6S13|1|A|A|230, 6S13|1|A|U|232, 6S13|1|A|C|234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S13|1|A|G|45
6S13|1|A|C|46
*
6S13|1|A|G|181
6S13|1|A|C|182
6S13|1|A|A|183
6S13|1|A|C|184
6S13|1|A|A|185
6S13|1|A|C|186
*
6S13|1|A|G|217
6S13|1|A|G|218
6S13|1|A|A|219
6S13|1|A|A|220
6S13|1|A|G|221
6S13|1|A|A|222
6S13|1|A|G|223
6S13|1|A|A|224
6S13|1|A|A|225
6S13|1|A|A|226
6S13|1|A|G|227
6S13|1|A|A|228
6S13|1|A|A|229
6S13|1|A|A|230
6S13|1|A|A|231
6S13|1|A|U|232
6S13|1|A|U|233
6S13|1|A|C|234
6S13|1|A|G|235
6S13|1|A|A|236
6S13|1|A|U|237
6S13|1|A|U|238
*
6S13|1|A|A|265
6S13|1|A|A|266
6S13|1|A|G|267
6S13|1|A|A|268
6S13|1|A|G|269
*
6S13|1|A|C|472
6S13|1|A|U|473
6S13|1|A|A|474
6S13|1|A|A|475
6S13|1|A|A|476
6S13|1|A|U|477
6S13|1|A|A|478
6S13|1|A|C|479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34