J5_6S47_002
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6S47|1|AA|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6S47_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0506
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S47|1|AA|G|658
6S47|1|AA|G|659
6S47|1|AA|A|660
6S47|1|AA|G|661
6S47|1|AA|U|662
6S47|1|AA|C|663
*
6S47|1|AA|G|799
6S47|1|AA|G|800
6S47|1|AA|A|801
6S47|1|AA|C|802
*
6S47|1|AA|G|941
6S47|1|AA|U|942
6S47|1|AA|U|943
6S47|1|AA|C|944
*
6S47|1|AA|G|1375
6S47|1|AA|C|1376
*
6S47|1|AA|G|1431
6S47|1|AA|C|1432
6S47|1|AA|A|1433
6S47|1|AA|G|1434
6S47|1|AA|A|1435
6S47|1|AA|U|1436
6S47|1|AA|C|1437
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein L4-A
- Chain AN
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L15-A
- Chain Ac
- 60S ribosomal protein L28
- Chain Ag
- 60S ribosomal protein L32
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