J5_6S47_008
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6S47|1|BA|A|93, 6S47|1|BA|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6S47_008 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.052
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6S47|1|BA|C|54
6S47|1|BA|A|55
6S47|1|BA|U|56
6S47|1|BA|G|57
*
6S47|1|BA|C|90
6S47|1|BA|G|91
6S47|1|BA|A|92
6S47|1|BA|A|93
6S47|1|BA|U|94
6S47|1|BA|G|95
6S47|1|BA|G|96
6S47|1|BA|C|97
*
6S47|1|BA|G|386
6S47|1|BA|A|387
6S47|1|BA|G|388
*
6S47|1|BA|C|409
6S47|1|BA|A|410
6S47|1|BA|C|411
*
6S47|1|BA|G|422
6S47|1|BA|G|423
6S47|1|BA|C|424
6S47|1|BA|A|425
6S47|1|BA|G|426
Current chains
- Chain BA
- 18S rRNA (1707-MER)
Nearby chains
- Chain AX
- 60S ribosomal protein L23-A
- Chain BF
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S6-A
- Chain BJ
- 40S ribosomal protein S8-A
- Chain BK
- 40S ribosomal protein S9-A
- Chain BZ
- 40S ribosomal protein S24-A
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