J5_6SGC_002
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 6SGC|1|54|C|2289, 6SGC|1|54|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SGC_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0597
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|G|1335
6SGC|1|54|G|1336
6SGC|1|54|A|1337
6SGC|1|54|G|1338
6SGC|1|54|U|1339
6SGC|1|54|C|1340
*
6SGC|1|54|G|1516
6SGC|1|54|G|1517
6SGC|1|54|A|1518
6SGC|1|54|C|1519
*
6SGC|1|54|G|1658
6SGC|1|54|U|1659
6SGC|1|54|U|1660
6SGC|1|54|C|1661
*
6SGC|1|54|G|2288
6SGC|1|54|C|2289
6SGC|1|54|C|2290
*
6SGC|1|54|G|2345
6SGC|1|54|C|2346
6SGC|1|54|A|2347
6SGC|1|54|G|2348
6SGC|1|54|A|2349
6SGC|1|54|U|2350
6SGC|1|54|C|2351
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- uL4
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain e2
- eL32
- Chain r2
- Ribosomal_L28e domain-containing protein
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