J5_6SGC_003
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6SGC|1|54|G|3620, 6SGC|1|54|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SGC_003 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1086
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|G|2855
6SGC|1|54|C|2856
6SGC|1|54|A|2857
6SGC|1|54|A|2858
6SGC|1|54|G|2859
6SGC|1|54|C|2860
6SGC|1|54|C|2861
6SGC|1|54|G|2862
6SGC|1|54|G|2863
*
6SGC|1|54|U|2887
6SGC|1|54|G|2888
*
6SGC|1|54|U|3613
6SGC|1|54|G|3614
*
6SGC|1|54|C|3618
6SGC|1|54|G|3619
6SGC|1|54|G|3620
6SGC|1|54|A|3621
6SGC|1|54|C|3622
6SGC|1|54|C|3623
6SGC|1|54|A|3624
6SGC|1|54|G|3625
6SGC|1|54|G|3626
*
6SGC|1|54|C|3835
6SGC|1|54|A|3836
6SGC|1|54|C|3837
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain B2
- uL3
- Chain R2
- eL19
- Chain V2
- Ribosomal protein L23
- Chain W2
- TRASH domain-containing protein
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