J5_6SGC_004
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 6SGC|1|54|A|3908, 6SGC|1|54|A|4394, 6SGC|1|54|G|4451, 6SGC|1|54|U|4555, 6SGC|1|54|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|A|3903
6SGC|1|54|G|3904
6SGC|1|54|A|3905
6SGC|1|54|A|3906
6SGC|1|54|G|3907
6SGC|1|54|A|3908
6SGC|1|54|C|3909
6SGC|1|54|C|3910
*
6SGC|1|54|G|4392
6SGC|1|54|G|4393
6SGC|1|54|A|4394
6SGC|1|54|U|4395
6SGC|1|54|A|4396
6SGC|1|54|A|4397
6SGC|1|54|C|4398
6SGC|1|54|U|4399
6SGC|1|54|G|4400
*
6SGC|1|54|C|4444
6SGC|1|54|U|4445
6SGC|1|54|U|4446
6SGC|1|54|C|4447
6SGC|1|54|G|4448
6SGC|1|54|A|4449
6SGC|1|54|U|4450
6SGC|1|54|G|4451
6SGC|1|54|U|4452
6SGC|1|54|C|4453
*
6SGC|1|54|G|4528
6SGC|1|54|G|4529
6SGC|1|54|U|4530
6SGC|1|54|U|4531
6SGC|1|54|U|4532
6SGC|1|54|A|4533
6SGC|1|54|G|4534
*
6SGC|1|54|U|4552
6SGC|1|54|A|4553
6SGC|1|54|G|4554
6SGC|1|54|U|4555
6SGC|1|54|U|4556
6SGC|1|54|U|4557
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain A2
- Ribosomal protein L8
- Chain B2
- uL3
- Chain C2
- uL4
- Chain XX
- poly-lysine nascent chain
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain b2
- eL29
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