J5_6SGC_009

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

6SGC|1|A1|G|126, 6SGC|1|A1|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|G|123
6SGC|1|A1|U|124
6SGC|1|A1|C|125
6SGC|1|A1|G|126
6SGC|1|A1|C|127
6SGC|1|A1|U|128
6SGC|1|A1|C|129
6SGC|1|A1|G|130
*
6SGC|1|A1|C|182
6SGC|1|A1|G|183
6SGC|1|A1|G|184
6SGC|1|A1|G|185
*
6SGC|1|A1|U|214
6SGC|1|A1|G|215
*
6SGC|1|A1|C|310
6SGC|1|A1|C|311
6SGC|1|A1|G|312
*
6SGC|1|A1|C|337
6SGC|1|A1|G|338
6SGC|1|A1|A|339
6SGC|1|A1|C|340
6SGC|1|A1|C|341

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain H1

40S ribosomal protein S6

Chain J1

40S ribosomal protein S8