J5_6SJ6_002

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCAAACCAACAAG*CUUGUUGGGGUUGUA*UGAGUACG*CGGAAUCUGG*CUAAG

Length

51 nucleotides

Bulged bases

6SJ6|1|A|U|301, 6SJ6|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|C|271
6SJ6|1|A|C|272
6SJ6|1|A|A|273
6SJ6|1|A|A|274
6SJ6|1|A|A|275
6SJ6|1|A|C|276
6SJ6|1|A|C|277
6SJ6|1|A|A|278
6SJ6|1|A|A|279
6SJ6|1|A|C|280
6SJ6|1|A|A|281
6SJ6|1|A|A|282
6SJ6|1|A|G|283
*
6SJ6|1|A|C|288
6SJ6|1|A|U|289
6SJ6|1|A|U|290
6SJ6|1|A|G|291
6SJ6|1|A|U|292
6SJ6|1|A|U|293
6SJ6|1|A|G|294
6SJ6|1|A|G|295
6SJ6|1|A|G|296
6SJ6|1|A|G|297
6SJ6|1|A|U|298
6SJ6|1|A|U|299
6SJ6|1|A|G|300
6SJ6|1|A|U|301
6SJ6|1|A|A|302
*
6SJ6|1|A|U|415
6SJ6|1|A|G|416
6SJ6|1|A|A|417
6SJ6|1|A|G|418
6SJ6|1|A|U|419
6SJ6|1|A|A|420
6SJ6|1|A|C|421
6SJ6|1|A|G|422
*
6SJ6|1|A|C|444
6SJ6|1|A|G|445
6SJ6|1|A|G|446
6SJ6|1|A|A|447
6SJ6|1|A|A|448
6SJ6|1|A|U|449
6SJ6|1|A|C|450
6SJ6|1|A|U|451
6SJ6|1|A|G|452
6SJ6|1|A|G|453
*
6SJ6|1|A|C|466
6SJ6|1|A|U|467
6SJ6|1|A|A|468
6SJ6|1|A|A|469
6SJ6|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28