J5_6SJ6_006

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUUUA*UUUG*CG*CG*CGGAUAAAAG

Length

23 nucleotides

Bulged bases

6SJ6|1|A|U|2103, 6SJ6|1|A|G|2455, 6SJ6|1|A|G|2456, 6SJ6|1|A|A|2457, 6SJ6|1|A|U|2458, 6SJ6|1|A|A|2459, 6SJ6|1|A|A|2460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|C|2100
6SJ6|1|A|U|2101
6SJ6|1|A|U|2102
6SJ6|1|A|U|2103
6SJ6|1|A|A|2104
*
6SJ6|1|A|U|2270
6SJ6|1|A|U|2271
6SJ6|1|A|U|2272
6SJ6|1|A|G|2273
*
6SJ6|1|A|C|2285
6SJ6|1|A|G|2286
*
6SJ6|1|A|C|2308
6SJ6|1|A|G|2309
*
6SJ6|1|A|C|2454
6SJ6|1|A|G|2455
6SJ6|1|A|G|2456
6SJ6|1|A|A|2457
6SJ6|1|A|U|2458
6SJ6|1|A|A|2459
6SJ6|1|A|A|2460
6SJ6|1|A|A|2461
6SJ6|1|A|A|2462
6SJ6|1|A|G|2463

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain O

50S ribosomal protein L15

Chain Z

50S ribosomal protein L27