J5_6SKF_002

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAG*CGGACGGC*GA(OMU)*AGG*CGCAG

Length

23 nucleotides

Bulged bases

6SKF|1|Aa|A|88, 6SKF|1|Aa|C|340

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|C|54
6SKF|1|Aa|G|55
6SKF|1|Aa|A|56
6SKF|1|Aa|G|57
*
6SKF|1|Aa|C|85
6SKF|1|Aa|G|86
6SKF|1|Aa|G|87
6SKF|1|Aa|A|88
6SKF|1|Aa|C|89
6SKF|1|Aa|G|90
6SKF|1|Aa|G|91
6SKF|1|Aa|C|92
*
6SKF|1|Aa|G|302
6SKF|1|Aa|A|303
6SKF|1|Aa|OMU|304
*
6SKF|1|Aa|A|325
6SKF|1|Aa|G|326
6SKF|1|Aa|G|327
*
6SKF|1|Aa|C|338
6SKF|1|Aa|G|339
6SKF|1|Aa|C|340
6SKF|1|Aa|A|341
6SKF|1|Aa|G|342

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ah

30S ribosomal protein S6e

Chain Ak

30S ribosomal protein S8e

Chain BL

50S ribosomal protein L14