J5_6SKF_003

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(4AC)GACGAA(OMG)*(4AC)GAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6SKF|1|BA|C|59

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|4AC|56
6SKF|1|BA|G|57
6SKF|1|BA|A|58
6SKF|1|BA|C|59
6SKF|1|BA|G|60
6SKF|1|BA|A|61
6SKF|1|BA|A|62
6SKF|1|BA|OMG|63
*
6SKF|1|BA|4AC|124
6SKF|1|BA|G|125
6SKF|1|BA|A|126
6SKF|1|BA|A|127
6SKF|1|BA|U|128
6SKF|1|BA|G|129
*
6SKF|1|BA|C|138
6SKF|1|BA|G|139
*
6SKF|1|BA|C|152
6SKF|1|BA|A|153
6SKF|1|BA|C|154
*
6SKF|1|BA|G|167
6SKF|1|BA|G|168
6SKF|1|BA|G|169

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e