J5_6SKF_004

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCAAAC*G(5MU)GUUGUA*UGAGUAC*GGAAGCUG*CAAC

Length

33 nucleotides

Bulged bases

6SKF|1|BA|U|303, 6SKF|1|BA|U|444

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|259
6SKF|1|BA|C|260
6SKF|1|BA|A|261
6SKF|1|BA|A|262
6SKF|1|BA|A|263
6SKF|1|BA|C|264
*
6SKF|1|BA|G|297
6SKF|1|BA|5MU|298
6SKF|1|BA|G|299
6SKF|1|BA|U|300
6SKF|1|BA|U|301
6SKF|1|BA|G|302
6SKF|1|BA|U|303
6SKF|1|BA|A|304
*
6SKF|1|BA|U|411
6SKF|1|BA|G|412
6SKF|1|BA|A|413
6SKF|1|BA|G|414
6SKF|1|BA|U|415
6SKF|1|BA|A|416
6SKF|1|BA|C|417
*
6SKF|1|BA|G|438
6SKF|1|BA|G|439
6SKF|1|BA|A|440
6SKF|1|BA|A|441
6SKF|1|BA|G|442
6SKF|1|BA|C|443
6SKF|1|BA|U|444
6SKF|1|BA|G|445
*
6SKF|1|BA|C|461
6SKF|1|BA|A|462
6SKF|1|BA|A|463
6SKF|1|BA|C|464

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e