J5_6SKF_010

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAGACC*(OMG)GA(4SU)AACAG*CCU(5MC)GCUG(OMU)*G(5MU)UUAG*CGGAUG

Length

38 nucleotides

Bulged bases

6SKF|1|BA|A|2552, 6SKF|1|BA|U|2714

QA status

Modified nucleotides: OMG, 4SU, 5MC, OMU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|C|2169
6SKF|1|BA|G|2170
6SKF|1|BA|A|2171
6SKF|1|BA|A|2172
6SKF|1|BA|G|2173
6SKF|1|BA|A|2174
6SKF|1|BA|C|2175
6SKF|1|BA|C|2176
*
6SKF|1|BA|OMG|2550
6SKF|1|BA|G|2551
6SKF|1|BA|A|2552
6SKF|1|BA|4SU|2553
6SKF|1|BA|A|2554
6SKF|1|BA|A|2555
6SKF|1|BA|C|2556
6SKF|1|BA|A|2557
6SKF|1|BA|G|2558
*
6SKF|1|BA|C|2602
6SKF|1|BA|C|2603
6SKF|1|BA|U|2604
6SKF|1|BA|5MC|2605
6SKF|1|BA|G|2606
6SKF|1|BA|C|2607
6SKF|1|BA|U|2608
6SKF|1|BA|G|2609
6SKF|1|BA|OMU|2610
*
6SKF|1|BA|G|2687
6SKF|1|BA|5MU|2688
6SKF|1|BA|U|2689
6SKF|1|BA|U|2690
6SKF|1|BA|A|2691
6SKF|1|BA|G|2692
*
6SKF|1|BA|C|2710
6SKF|1|BA|G|2711
6SKF|1|BA|G|2712
6SKF|1|BA|A|2713
6SKF|1|BA|U|2714
6SKF|1|BA|G|2715

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15