J5_6SKG_008
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAG*CGCAG*CGACAGG*CGG*CGGAG
- Length
- 24 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SKG_008 not in the Motif Atlas
- Homologous match to J5_4V9F_005
- Geometric discrepancy: 0.2229
- The information below is about J5_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63867.1
- Basepair signature
- cWW-F-F-F-F-cWW-cHW-cWW-F-F-cWW-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6SKG|1|BA|C|692
6SKG|1|BA|G|693
6SKG|1|BA|A|694
6SKG|1|BA|G|695
*
6SKG|1|BA|C|719
6SKG|1|BA|G|720
6SKG|1|BA|C|721
6SKG|1|BA|A|722
6SKG|1|BA|G|723
*
6SKG|1|BA|C|730
6SKG|1|BA|G|731
6SKG|1|BA|A|732
6SKG|1|BA|C|733
6SKG|1|BA|A|734
6SKG|1|BA|G|735
6SKG|1|BA|G|736
*
6SKG|1|BA|C|761
6SKG|1|BA|G|762
6SKG|1|BA|G|763
*
6SKG|1|BA|C|778
6SKG|1|BA|G|779
6SKG|1|BA|G|780
6SKG|1|BA|A|781
6SKG|1|BA|G|782
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BO
- 50S ribosomal protein L15
- Chain BR
- 50S ribosomal protein L18e
- Chain Bq
- Unknown ribosomal protein
Coloring options: