J5_6SKG_011
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UUUA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6SKG|1|BA|U|2188, 6SKG|1|BA|A|2534, 6SKG|1|BA|G|2535, 6SKG|1|BA|A|2536, 6SKG|1|BA|A|2537
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SKG_011 not in the Motif Atlas
- Homologous match to J5_4V9F_008
- Geometric discrepancy: 0.1247
- The information below is about J5_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SKG|1|BA|U|2186
6SKG|1|BA|U|2187
6SKG|1|BA|U|2188
6SKG|1|BA|A|2189
*
6SKG|1|BA|U|2345
6SKG|1|BA|U|2346
6SKG|1|BA|U|2347
6SKG|1|BA|G|2348
*
6SKG|1|BA|C|2361
6SKG|1|BA|A|2362
*
6SKG|1|BA|U|2384
6SKG|1|BA|G|2385
*
6SKG|1|BA|C|2533
6SKG|1|BA|A|2534
6SKG|1|BA|G|2535
6SKG|1|BA|A|2536
6SKG|1|BA|A|2537
6SKG|1|BA|A|2538
6SKG|1|BA|A|2539
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L2
- Chain BO
- 50S ribosomal protein L15
- Chain BP
- 50S ribosomal protein L15e
- Chain BU
- 50S ribosomal protein L21e
- Chain Bl
- 50S ribosomal protein L44e
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