J5_6SPB_004

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGG*CGC

Length

25 nucleotides

Bulged bases

6SPB|1|A|G|1750

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SPB_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0754

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SPB|1|A|G|1664
6SPB|1|A|C|1665
6SPB|1|A|A|1666
6SPB|1|A|A|1667
6SPB|1|A|A|1668
6SPB|1|A|A|1669
6SPB|1|A|U|1670
6SPB|1|A|G|1671
6SPB|1|A|G|1672
*
6SPB|1|A|C|1696
6SPB|1|A|G|1697
*
6SPB|1|A|U|1738
6SPB|1|A|C|1739
*
6SPB|1|A|G|1743
6SPB|1|A|A|1744
6SPB|1|A|U|1745
6SPB|1|A|A|1746
6SPB|1|A|C|1747
6SPB|1|A|C|1748
6SPB|1|A|A|1749
6SPB|1|A|G|1750
6SPB|1|A|G|1751
*
6SPB|1|A|C|1975
6SPB|1|A|G|1976
6SPB|1|A|C|1977

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19