J5_6SPE_004

3D structure

PDB id

6SPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6SPE|1|a|A|103, 6SPE|1|a|C|346, 6SPE|1|a|A|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SPE_004 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1171

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SPE|1|a|C|58
6SPE|1|a|A|59
6SPE|1|a|A|60
6SPE|1|a|G|61
*
6SPE|1|a|C|100
6SPE|1|a|G|101
6SPE|1|a|G|102
6SPE|1|a|A|103
6SPE|1|a|C|104
6SPE|1|a|G|105
6SPE|1|a|G|106
6SPE|1|a|G|107
*
6SPE|1|a|C|308
6SPE|1|a|A|309
6SPE|1|a|C|310
*
6SPE|1|a|G|331
6SPE|1|a|A|332
6SPE|1|a|C|333
*
6SPE|1|a|G|344
6SPE|1|a|G|345
6SPE|1|a|C|346
6SPE|1|a|A|347
6SPE|1|a|G|348

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20