J5_6SPF_001

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

6SPF|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6SPF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.081

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6SPF|1|A|C|47
6SPF|1|A|G|48
6SPF|1|A|A|49
6SPF|1|A|U|50
6SPF|1|A|G|51
6SPF|1|A|A|52
6SPF|1|A|A|53
6SPF|1|A|A|54
*
6SPF|1|A|U|116
6SPF|1|A|G|117
6SPF|1|A|A|118
6SPF|1|A|A|119
6SPF|1|A|U|120
6SPF|1|A|G|121
*
6SPF|1|A|C|130
6SPF|1|A|A|131
*
6SPF|1|A|U|148
6SPF|1|A|A|149
6SPF|1|A|U|150
*
6SPF|1|A|A|176
6SPF|1|A|G|177
6SPF|1|A|G|178

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34