J5_6SPF_005
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 6SPF|1|A|A|2049, 6SPF|1|A|A|2435, 6SPF|1|A|U|2436, 6SPF|1|A|U|2596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|A|G|2044
6SPF|1|A|A|2045
6SPF|1|A|A|2046
6SPF|1|A|A|2047
6SPF|1|A|G|2048
6SPF|1|A|A|2049
6SPF|1|A|C|2050
6SPF|1|A|C|2051
*
6SPF|1|A|G|2433
6SPF|1|A|G|2434
6SPF|1|A|A|2435
6SPF|1|A|U|2436
6SPF|1|A|A|2437
6SPF|1|A|A|2438
6SPF|1|A|C|2439
6SPF|1|A|A|2440
*
6SPF|1|A|U|2487
6SPF|1|A|C|2488
6SPF|1|A|G|2489
6SPF|1|A|A|2490
6SPF|1|A|U|2491
6SPF|1|A|G|2492
6SPF|1|A|U|2493
*
6SPF|1|A|G|2570
6SPF|1|A|U|2571
6SPF|1|A|U|2572
6SPF|1|A|U|2573
6SPF|1|A|A|2574
6SPF|1|A|G|2575
*
6SPF|1|A|C|2593
6SPF|1|A|G|2594
6SPF|1|A|G|2595
6SPF|1|A|U|2596
6SPF|1|A|C|2597
6SPF|1|A|C|2598
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain C
- 50S ribosomal protein L2
- Chain D
- 50S ribosomal protein L3
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
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