J5_6SPF_009
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUGGC*GCGUG*CUUUAAG*CAGAAUAAG*CAAG
- Length
- 30 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|a|C|36
6SPF|1|a|U|37
6SPF|1|a|G|38
6SPF|1|a|G|39
6SPF|1|a|C|40
*
6SPF|1|a|G|396
6SPF|1|a|C|397
6SPF|1|a|G|398
6SPF|1|a|U|399
6SPF|1|a|G|400
*
6SPF|1|a|C|430
6SPF|1|a|U|431
6SPF|1|a|U|432
6SPF|1|a|U|433
6SPF|1|a|A|434
6SPF|1|a|A|435
6SPF|1|a|G|436
*
6SPF|1|a|C|486
6SPF|1|a|A|487
6SPF|1|a|G|488
6SPF|1|a|A|489
6SPF|1|a|A|490
6SPF|1|a|U|491
6SPF|1|a|A|492
6SPF|1|a|A|493
6SPF|1|a|G|494
*
6SPF|1|a|C|539
6SPF|1|a|A|540
6SPF|1|a|A|541
6SPF|1|a|G|542
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: