J5_6SPG_001

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGAUGAAA*UGAAUG*CA*UAUC*GAGG

Length

24 nucleotides

Bulged bases

6SPG|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|C|47
6SPG|1|A|G|48
6SPG|1|A|A|49
6SPG|1|A|U|50
6SPG|1|A|G|51
6SPG|1|A|A|52
6SPG|1|A|A|53
6SPG|1|A|A|54
*
6SPG|1|A|U|116
6SPG|1|A|G|117
6SPG|1|A|A|118
6SPG|1|A|A|119
6SPG|1|A|U|120
6SPG|1|A|G|121
*
6SPG|1|A|C|130
6SPG|1|A|A|131
*
6SPG|1|A|U|148
6SPG|1|A|A|149
6SPG|1|A|U|150
6SPG|1|A|C|151
*
6SPG|1|A|G|175
6SPG|1|A|A|176
6SPG|1|A|G|177
6SPG|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34