J5_6SPG_002
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CAGU*GCGUAC*GGG*CA*UG
- Length
- 17 nucleotides
- Bulged bases
- 6SPG|1|A|A|523, 6SPG|1|A|U|552
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPG|1|A|C|522
6SPG|1|A|A|523
6SPG|1|A|G|524
6SPG|1|A|U|525
*
6SPG|1|A|G|549
6SPG|1|A|C|550
6SPG|1|A|G|551
6SPG|1|A|U|552
6SPG|1|A|A|553
6SPG|1|A|C|554
*
6SPG|1|A|G|567
6SPG|1|A|G|568
6SPG|1|A|G|569
*
6SPG|1|A|C|1248
6SPG|1|A|A|1249
*
6SPG|1|A|U|2004
6SPG|1|A|G|2005
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain S
- 50S ribosomal protein L22
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