J5_6SPG_005

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

6SPG|1|A|A|2049, 6SPG|1|A|A|2435, 6SPG|1|A|U|2436, 6SPG|1|A|U|2493, 6SPG|1|A|U|2596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|G|2044
6SPG|1|A|A|2045
6SPG|1|A|A|2046
6SPG|1|A|A|2047
6SPG|1|A|G|2048
6SPG|1|A|A|2049
6SPG|1|A|C|2050
6SPG|1|A|C|2051
*
6SPG|1|A|G|2433
6SPG|1|A|G|2434
6SPG|1|A|A|2435
6SPG|1|A|U|2436
6SPG|1|A|A|2437
6SPG|1|A|A|2438
6SPG|1|A|C|2439
6SPG|1|A|A|2440
*
6SPG|1|A|U|2487
6SPG|1|A|C|2488
6SPG|1|A|G|2489
6SPG|1|A|A|2490
6SPG|1|A|U|2491
6SPG|1|A|G|2492
6SPG|1|A|U|2493
6SPG|1|A|C|2494
*
6SPG|1|A|G|2569
6SPG|1|A|G|2570
6SPG|1|A|U|2571
6SPG|1|A|U|2572
6SPG|1|A|U|2573
6SPG|1|A|A|2574
6SPG|1|A|G|2575
*
6SPG|1|A|C|2593
6SPG|1|A|G|2594
6SPG|1|A|G|2595
6SPG|1|A|U|2596
6SPG|1|A|C|2597
6SPG|1|A|C|2598

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L16

Chain S

50S ribosomal protein L22