J5_6SPG_008

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CAAG*CGGACGGG*CACU*AGAC*GGCAG

Length

25 nucleotides

Bulged bases

6SPG|1|a|A|103, 6SPG|1|a|C|346, 6SPG|1|a|A|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|a|C|58
6SPG|1|a|A|59
6SPG|1|a|A|60
6SPG|1|a|G|61
*
6SPG|1|a|C|100
6SPG|1|a|G|101
6SPG|1|a|G|102
6SPG|1|a|A|103
6SPG|1|a|C|104
6SPG|1|a|G|105
6SPG|1|a|G|106
6SPG|1|a|G|107
*
6SPG|1|a|C|308
6SPG|1|a|A|309
6SPG|1|a|C|310
6SPG|1|a|U|311
*
6SPG|1|a|A|330
6SPG|1|a|G|331
6SPG|1|a|A|332
6SPG|1|a|C|333
*
6SPG|1|a|G|344
6SPG|1|a|G|345
6SPG|1|a|C|346
6SPG|1|a|A|347
6SPG|1|a|G|348

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20