J5_6SPG_012
3D structure
- PDB id
- 6SPG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- CUGG*CGUG*CUUUA*UAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SPG_012 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.1495
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6SPG|1|a|C|36
6SPG|1|a|U|37
6SPG|1|a|G|38
6SPG|1|a|G|39
*
6SPG|1|a|C|397
6SPG|1|a|G|398
6SPG|1|a|U|399
6SPG|1|a|G|400
*
6SPG|1|a|C|430
6SPG|1|a|U|431
6SPG|1|a|U|432
6SPG|1|a|U|433
6SPG|1|a|A|434
*
6SPG|1|a|U|491
6SPG|1|a|A|492
6SPG|1|a|A|493
6SPG|1|a|G|494
*
6SPG|1|a|C|539
6SPG|1|a|A|540
6SPG|1|a|A|541
6SPG|1|a|G|542
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
Coloring options: