J5_6SV4_003

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

6SV4|1|2|U|128, 6SV4|1|2|C|130, 6SV4|1|2|C|131, 6SV4|1|2|U|132, 6SV4|1|2|U|133, 6SV4|1|2|A|140, 6SV4|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2|A|124
6SV4|1|2|U|125
6SV4|1|2|A|126
6SV4|1|2|G|127
6SV4|1|2|U|128
6SV4|1|2|U|129
6SV4|1|2|C|130
6SV4|1|2|C|131
6SV4|1|2|U|132
6SV4|1|2|U|133
6SV4|1|2|U|134
6SV4|1|2|A|135
6SV4|1|2|C|136
6SV4|1|2|U|137
6SV4|1|2|A|138
6SV4|1|2|C|139
6SV4|1|2|A|140
6SV4|1|2|U|141
6SV4|1|2|G|142
6SV4|1|2|G|143
*
6SV4|1|2|C|172
6SV4|1|2|A|173
6SV4|1|2|U|174
6SV4|1|2|G|175
6SV4|1|2|C|176
6SV4|1|2|U|177
6SV4|1|2|U|178
6SV4|1|2|A|179
6SV4|1|2|A|180
6SV4|1|2|A|181
6SV4|1|2|A|182
*
6SV4|1|2|U|203
6SV4|1|2|G|204
*
6SV4|1|2|C|263
6SV4|1|2|G|264
6SV4|1|2|A|265
*
6SV4|1|2|U|289
6SV4|1|2|G|290
6SV4|1|2|G|291
6SV4|1|2|U|292
6SV4|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A