J5_6SV4_011

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

48 nucleotides

Bulged bases

6SV4|1|2c|A|541, 6SV4|1|2c|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|C|31
6SV4|1|2c|U|32
6SV4|1|2c|U|33
6SV4|1|2c|G|34
6SV4|1|2c|U|35
6SV4|1|2c|C|36
6SV4|1|2c|U|37
6SV4|1|2c|C|38
6SV4|1|2c|A|39
6SV4|1|2c|A|40
6SV4|1|2c|A|41
*
6SV4|1|2c|U|466
6SV4|1|2c|G|467
6SV4|1|2c|A|468
6SV4|1|2c|C|469
6SV4|1|2c|A|470
6SV4|1|2c|A|471
6SV4|1|2c|U|472
6SV4|1|2c|A|473
6SV4|1|2c|A|474
6SV4|1|2c|A|475
6SV4|1|2c|U|476
6SV4|1|2c|A|477
6SV4|1|2c|A|478
6SV4|1|2c|C|479
*
6SV4|1|2c|G|509
6SV4|1|2c|G|510
6SV4|1|2c|A|511
6SV4|1|2c|A|512
6SV4|1|2c|U|513
6SV4|1|2c|G|514
6SV4|1|2c|A|515
6SV4|1|2c|G|516
*
6SV4|1|2c|C|536
6SV4|1|2c|G|537
6SV4|1|2c|A|538
6SV4|1|2c|G|539
6SV4|1|2c|G|540
6SV4|1|2c|A|541
6SV4|1|2c|A|542
6SV4|1|2c|C|543
6SV4|1|2c|A|544
6SV4|1|2c|A|545
6SV4|1|2c|U|546
*
6SV4|1|2c|A|592
6SV4|1|2c|U|593
6SV4|1|2c|A|594
6SV4|1|2c|G|595

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A

Chain cc

40S ribosomal protein S23-A

Chain gc

40S ribosomal protein S30-A