Loop J5_6SV4

3D structure

PDB id: 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length: 44 nucleotides
Bulged bases: 6SV4|1|2c|U|128, 6SV4|1|2c|C|131, 6SV4|1|2c|U|132, 6SV4|1|2c|U|133, 6SV4|1|2c|U|134, 6SV4|1|2c|A|135, 6SV4|1|2c|A|140, 6SV4|1|2c|U|141, 6SV4|1|2c|U|178
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SV4|1|2c|A|124
6SV4|1|2c|U|125
6SV4|1|2c|A|126
6SV4|1|2c|G|127
6SV4|1|2c|U|128
6SV4|1|2c|U|129
6SV4|1|2c|C|130
6SV4|1|2c|C|131
6SV4|1|2c|U|132
6SV4|1|2c|U|133
6SV4|1|2c|U|134
6SV4|1|2c|A|135
6SV4|1|2c|C|136
6SV4|1|2c|U|137
6SV4|1|2c|A|138
6SV4|1|2c|C|139
6SV4|1|2c|A|140
6SV4|1|2c|U|141
6SV4|1|2c|G|142
6SV4|1|2c|G|143
*
6SV4|1|2c|C|172
6SV4|1|2c|A|173
6SV4|1|2c|U|174
6SV4|1|2c|G|175
6SV4|1|2c|C|176
6SV4|1|2c|U|177
6SV4|1|2c|U|178
6SV4|1|2c|A|179
6SV4|1|2c|A|180
6SV4|1|2c|A|181
6SV4|1|2c|A|182
*
6SV4|1|2c|U|203
6SV4|1|2c|G|204
*
6SV4|1|2c|C|263
6SV4|1|2c|G|264
6SV4|1|2c|A|265
6SV4|1|2c|A|266
6SV4|1|2c|U|267
*
6SV4|1|2c|A|288
6SV4|1|2c|U|289
6SV4|1|2c|G|290
6SV4|1|2c|G|291
6SV4|1|2c|U|292
6SV4|1|2c|U|293

Current chains

Chain 2c: 18S rRNA

Nearby chains

Chain Sc: 40S ribosomal protein S4-A
Chain Tc: 40S ribosomal protein S6-A
Chain Vc: 40S ribosomal protein S8-A
Chain zE: 60S ribosomal protein L24-A

J5_6SV4_014