Loop J5_6SV4

3D structure

PDB id: 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: ACUUUGG*CUUUCCU*ACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU
Length: 46 nucleotides
Bulged bases: 6SV4|1|2c|U|638, 6SV4|1|2c|U|639, 6SV4|1|2c|U|640, 6SV4|1|2c|G|641, 6SV4|1|2c|C|697, 6SV4|1|2c|U|742, 6SV4|1|2c|U|813, 6SV4|1|2c|G|815, 6SV4|1|2c|A|856
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SV4|1|2c|A|636
6SV4|1|2c|C|637
6SV4|1|2c|U|638
6SV4|1|2c|U|639
6SV4|1|2c|U|640
6SV4|1|2c|G|641
6SV4|1|2c|G|642
*
6SV4|1|2c|C|692
6SV4|1|2c|U|693
6SV4|1|2c|U|694
6SV4|1|2c|U|695
6SV4|1|2c|C|696
6SV4|1|2c|C|697
6SV4|1|2c|U|698
*
6SV4|1|2c|A|740
6SV4|1|2c|C|741
6SV4|1|2c|U|742
6SV4|1|2c|U|743
6SV4|1|2c|U|744
*
6SV4|1|2c|A|807
6SV4|1|2c|U|808
6SV4|1|2c|A|809
6SV4|1|2c|G|810
6SV4|1|2c|A|811
6SV4|1|2c|A|812
6SV4|1|2c|U|813
6SV4|1|2c|A|814
6SV4|1|2c|G|815
6SV4|1|2c|G|816
6SV4|1|2c|A|817
6SV4|1|2c|C|818
6SV4|1|2c|G|819
6SV4|1|2c|U|820
6SV4|1|2c|U|821
6SV4|1|2c|U|822
*
6SV4|1|2c|A|850
6SV4|1|2c|U|851
6SV4|1|2c|C|852
6SV4|1|2c|G|853
6SV4|1|2c|U|854
6SV4|1|2c|A|855
6SV4|1|2c|A|856
6SV4|1|2c|U|857
6SV4|1|2c|G|858
6SV4|1|2c|A|859
6SV4|1|2c|U|860

Current chains

Chain 2c: 18S rRNA

Nearby chains

Chain Uc: 40S ribosomal protein S7-A
Chain Xc: 40S ribosomal protein S11-A
Chain Yc: 40S ribosomal protein S13
Chain ZF: 60S ribosomal protein L19-A
Chain bc: 40S ribosomal protein S22-A

J5_6SV4_015