J5_6SV4_030
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 6SV4|1|ZQ|U|719, 6SV4|1|ZQ|A|784, 6SV4|1|ZQ|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6SV4_030 not in the Motif Atlas
- Homologous match to J5_8C3A_003
- Geometric discrepancy: 0.0959
- The information below is about J5_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|ZQ|C|675
6SV4|1|ZQ|G|676
6SV4|1|ZQ|A|677
6SV4|1|ZQ|G|678
*
6SV4|1|ZQ|C|702
6SV4|1|ZQ|G|703
6SV4|1|ZQ|U|704
6SV4|1|ZQ|A|705
6SV4|1|ZQ|A|706
*
6SV4|1|ZQ|U|713
6SV4|1|ZQ|G|714
6SV4|1|ZQ|A|715
6SV4|1|ZQ|A|716
6SV4|1|ZQ|C|717
6SV4|1|ZQ|G|718
6SV4|1|ZQ|U|719
6SV4|1|ZQ|A|720
6SV4|1|ZQ|G|721
*
6SV4|1|ZQ|C|749
6SV4|1|ZQ|G|750
6SV4|1|ZQ|A|751
*
6SV4|1|ZQ|U|782
6SV4|1|ZQ|A|783
6SV4|1|ZQ|A|784
6SV4|1|ZQ|G|785
6SV4|1|ZQ|A|786
6SV4|1|ZQ|G|787
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain ZB
- 60S ribosomal protein L18-A
- Chain ZE
- 60S ribosomal protein L4-A
- Chain zC
- 60S ribosomal protein L36-A
- Chain zJ
- 60S ribosomal protein L13-A
- Chain zR
- 60S ribosomal protein L28
- Chain zV
- 60S ribosomal protein L29
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