Loop J5_6SV4

3D structure

PDB id: 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 6SV4|1|ZQ|A|2404, 6SV4|1|ZQ|A|2817, 6SV4|1|ZQ|U|2873, 6SV4|1|ZQ|U|2978
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SV4|1|ZQ|A|2399
6SV4|1|ZQ|G|2400
6SV4|1|ZQ|A|2401
6SV4|1|ZQ|A|2402
6SV4|1|ZQ|G|2403
6SV4|1|ZQ|A|2404
6SV4|1|ZQ|C|2405
6SV4|1|ZQ|C|2406
*
6SV4|1|ZQ|G|2815
6SV4|1|ZQ|G|2816
6SV4|1|ZQ|A|2817
6SV4|1|ZQ|U|2818
6SV4|1|ZQ|A|2819
6SV4|1|ZQ|A|2820
6SV4|1|ZQ|C|2821
6SV4|1|ZQ|U|2822
6SV4|1|ZQ|G|2823
*
6SV4|1|ZQ|C|2867
6SV4|1|ZQ|U|2868
6SV4|1|ZQ|U|2869
6SV4|1|ZQ|C|2870
6SV4|1|ZQ|G|2871
6SV4|1|ZQ|A|2872
6SV4|1|ZQ|U|2873
6SV4|1|ZQ|G|2874
6SV4|1|ZQ|U|2875
6SV4|1|ZQ|C|2876
*
6SV4|1|ZQ|G|2951
6SV4|1|ZQ|G|2952
6SV4|1|ZQ|U|2953
6SV4|1|ZQ|U|2954
6SV4|1|ZQ|U|2955
6SV4|1|ZQ|A|2956
6SV4|1|ZQ|G|2957
*
6SV4|1|ZQ|U|2975
6SV4|1|ZQ|A|2976
6SV4|1|ZQ|G|2977
6SV4|1|ZQ|U|2978
6SV4|1|ZQ|U|2979
6SV4|1|ZQ|U|2980

Current chains

Chain ZQ: 25S rRNA

Nearby chains

Chain ZA: 60S ribosomal protein L3
Chain ZE: 60S ribosomal protein L4-A
Chain nc: Transfer RNA; tRNA
Chain zV: 60S ribosomal protein L29
Chain zW: 60S ribosomal protein L2-A
Chain zX: 60S ribosomal protein L17-A

J5_6SV4_032